RSDB - A database of repetitive elements in complete genomes

Jorng Tzong Horng, Jia Hwang Lin, Cheng Yan Kao

研究成果: 書貢獻/報告類型會議論文篇章同行評審

5 引文 斯高帕斯(Scopus)

摘要

Repeat Sequence Database (RSDB) stores repeat sequences in genomes. RSDB differs from other databases with repeat sequences found by conventional experimental results because the repeat sequences recorded in RSDB are explored via a mathematical algorithm. This work designs and implements a database to store complete and comprehensive repeat sequences. This is despite the fact that the database contains direct, inverted and palindromic repetitive sequences, and each repetitive sequence has a variable length ranging from seven to several hundred nucleotides. A customized format of a flat file is defined for the database so that it can be easily translated into some other genome database systems. In addition, use of the database is facilitated by providing some searching tools based on the features, positions, patterns, accession numbers and sequence identifiers of repeat sequences. These searching tools are constructed mainly on SQL query statements to access the database through the Internet. As widely anticipated, the quantity of repetitive sequences of the database will become increasingly larger.

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主出版物標題Proceedings of the Atlantic Symposium on Computational Biology and Genome Information Systems and Technology, CBGIST 2001
編輯C.H. Wu, P.P. Wang, J.T.L. Wang
頁面220-224
頁數5
出版狀態已出版 - 2001
事件Proceedings of the Atlantic Symposium on Computational Biology and Genome Information Systems and Technology, GBGIST 2001 - Durham, NC, United States
持續時間: 15 3月 200117 3月 2001

出版系列

名字Proceedings of the Atlantic Symposium on Computational Biology and Genome Information Systems and Technolgoy, CBGIST 2001

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???event.eventtypes.event.conference???Proceedings of the Atlantic Symposium on Computational Biology and Genome Information Systems and Technology, GBGIST 2001
國家/地區United States
城市Durham, NC
期間15/03/0117/03/01

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