BIOSMILE web search: a web application for annotating biomedical entities and relations.

Hong Jie Dai; Chi Hsin Huang; Ryan T.K. Lin; Richard Tzong Han Tsai; Wen Lian Hsu

doi:10.1093/nar/gkn319

BIOSMILE web search: a web application for annotating biomedical entities and relations.

Hong Jie Dai, Chi Hsin Huang, Ryan T.K. Lin, Richard Tzong Han Tsai, Wen Lian Hsu

資訊工程學系

研究成果: 雜誌貢獻 › 期刊論文 › 同行評審

11 引文斯高帕斯（Scopus）

摘要

BIOSMILE web search (BWS), a web-based NCBI-PubMed search application, which can analyze articles for selected biomedical verbs and give users relational information, such as subject, object, location, manner, time, etc. After receiving keyword query input, BWS retrieves matching PubMed abstracts and lists them along with snippets by order of relevancy to protein-protein interaction. Users can then select articles for further analysis, and BWS will find and mark up biomedical relations in the text. The analysis results can be viewed in the abstract text or in table form. To date, BWS has been field tested by over 30 biologists and questionnaires have shown that subjects are highly satisfied with its capabilities and usability. BWS is accessible free of charge at http://bioservices.cse.yzu.edu.tw/BWS.

原文	???core.languages.en_GB???
頁（從 - 到）	W390-398
期刊	Nucleic Acids Research
卷	36
發行號	Web Server issue
DOIs	https://doi.org/10.1093/nar/gkn319
出版狀態	已出版 - 1 7月 2008

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10.1093/nar/gkn319

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title = "BIOSMILE web search: a web application for annotating biomedical entities and relations.",

abstract = "BIOSMILE web search (BWS), a web-based NCBI-PubMed search application, which can analyze articles for selected biomedical verbs and give users relational information, such as subject, object, location, manner, time, etc. After receiving keyword query input, BWS retrieves matching PubMed abstracts and lists them along with snippets by order of relevancy to protein-protein interaction. Users can then select articles for further analysis, and BWS will find and mark up biomedical relations in the text. The analysis results can be viewed in the abstract text or in table form. To date, BWS has been field tested by over 30 biologists and questionnaires have shown that subjects are highly satisfied with its capabilities and usability. BWS is accessible free of charge at http://bioservices.cse.yzu.edu.tw/BWS.",

author = "Dai, {Hong Jie} and Huang, {Chi Hsin} and Lin, {Ryan T.K.} and Tsai, {Richard Tzong Han} and Hsu, {Wen Lian}",

note = "Funding Information: This research was supported in part by the National Science Council under grant NSC96-2752-E-001-001-PAE and NSC97-2218-E-155-001 as well as the thematic program of Academia Sinica under grant AS95ASIA02. We especially thank Dr Gary Benson and the NAR reviewers for their valuable comments, which helped us improve the quality of the article.",

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AU - Lin, Ryan T.K.

AU - Tsai, Richard Tzong Han

AU - Hsu, Wen Lian

N1 - Funding Information: This research was supported in part by the National Science Council under grant NSC96-2752-E-001-001-PAE and NSC97-2218-E-155-001 as well as the thematic program of Academia Sinica under grant AS95ASIA02. We especially thank Dr Gary Benson and the NAR reviewers for their valuable comments, which helped us improve the quality of the article.

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BIOSMILE web search: a web application for annotating biomedical entities and relations.

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