TY - JOUR
T1 - 3D modelling of the pathogenic Leptospira protein LipL32
T2 - A bioinformatics approach
AU - Kumaran, Sharmilah Kumari
AU - Bakar, Mohd Faizal Abu
AU - Mohd-Padil, Hirzahida
AU - Mat-Sharani, Shuhaila
AU - Sakinah, S.
AU - Poorani, K.
AU - Alsaeedy, Hiba
AU - Peli, Amira
AU - Wei, Teh Seoh
AU - Ling, Mok Pooi
AU - Hamat, Rukman Awang
AU - Neela, Vasantha Kumari
AU - Higuchi, Akon
AU - Alarfaj, Abdullah A.
AU - Rajan, Mariappan
AU - Benelli, Giovanni
AU - Arulselvan, Palanisamy
AU - Kumar, S. Suresh
N1 - Publisher Copyright:
© 2017 Elsevier B.V.
PY - 2017/12
Y1 - 2017/12
N2 - Leptospirosis is a widespread zoonotic disease caused by pathogenic Leptospira species (Leptospiraceae). LipL32 is an abundant lipoprotein from the outer membrane proteins (OMPs) group, highly conserved among pathogenic and intermediate Leptospira species. Several studies used LipL32 as a specific gene to identify the presence of leptospires. This research was aimed to study the characteristics of LipL32 protein gene code, to fill the knowledge gap concerning the most appropriate gene that can be used as antigen to detect the Leptospira. Here, we investigated the features of LipL32 in fourteen Leptospira pathogenic strains based on comparative analyses of their primary, secondary structures and 3D modeling using a bioinformatics approach. Furthermore, the physicochemical properties of LipL32 in different strains were studied, shedding light on the identity of signal peptides, as well as on the secondary and tertiary structure of the LipL32 protein, supported by 3D modelling assays. The results showed that the LipL32 gene was present in all the fourteen pathogenic Leptospira strains used in this study, with limited diversity in terms of sequence conservation, hydrophobic group, hydrophilic group and number of turns (random coil). Overall, these results add basic knowledge to the characteristics of LipL32 protein, contributing to the identification of potential antigen candidates in future research, in order to ensure prompt and reliable detection of pathogenic Leptospira species.
AB - Leptospirosis is a widespread zoonotic disease caused by pathogenic Leptospira species (Leptospiraceae). LipL32 is an abundant lipoprotein from the outer membrane proteins (OMPs) group, highly conserved among pathogenic and intermediate Leptospira species. Several studies used LipL32 as a specific gene to identify the presence of leptospires. This research was aimed to study the characteristics of LipL32 protein gene code, to fill the knowledge gap concerning the most appropriate gene that can be used as antigen to detect the Leptospira. Here, we investigated the features of LipL32 in fourteen Leptospira pathogenic strains based on comparative analyses of their primary, secondary structures and 3D modeling using a bioinformatics approach. Furthermore, the physicochemical properties of LipL32 in different strains were studied, shedding light on the identity of signal peptides, as well as on the secondary and tertiary structure of the LipL32 protein, supported by 3D modelling assays. The results showed that the LipL32 gene was present in all the fourteen pathogenic Leptospira strains used in this study, with limited diversity in terms of sequence conservation, hydrophobic group, hydrophilic group and number of turns (random coil). Overall, these results add basic knowledge to the characteristics of LipL32 protein, contributing to the identification of potential antigen candidates in future research, in order to ensure prompt and reliable detection of pathogenic Leptospira species.
KW - 3D modeling
KW - Diagnostic
KW - Genomics
KW - LipL32
KW - Pathogenic leptospires
KW - Target gene
UR - http://www.scopus.com/inward/record.url?scp=85029812755&partnerID=8YFLogxK
U2 - 10.1016/j.actatropica.2017.09.011
DO - 10.1016/j.actatropica.2017.09.011
M3 - 期刊論文
C2 - 28941729
AN - SCOPUS:85029812755
SN - 0001-706X
VL - 176
SP - 433
EP - 439
JO - Acta Tropica
JF - Acta Tropica
ER -