An expert system to classify microarray gene expression data using gene selection by decision tree

Jorng Tzong Horng, Li Cheng Wu, Baw Juine Liu, Jun Li Kuo, Wen Horng Kuo, Jin Jian Zhang

Research output: Contribution to journalArticlepeer-review

56 Scopus citations

Abstract

Gene selection can help the analysis of microarray gene expression data. However, it is very difficult to obtain a satisfactory classification result by machine learning techniques because of both the curse-of-dimensionality problem and the over-fitting problem. That is, the dimensions of the features are too large but the samples are too few. In this study, we designed an approach that attempts to avoid these two problems and then used it to select a small set of significant biomarker genes for diagnosis. Finally, we attempted to use these markers for the classification of cancer. This approach was tested the approach on a number of microarray datasets in order to demonstrate that it performs well and is both useful and reliable.

Original languageEnglish
Pages (from-to)9072-9081
Number of pages10
JournalExpert Systems with Applications
Volume36
Issue number5
DOIs
StatePublished - Jul 2009

Keywords

  • Bioinformatics
  • Decision tree
  • Expert system
  • Machine learning
  • Microarray gene expression

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